Basic Information
VIS ID
TVIS30009370
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
98963904/99366281 (Hg38)
End
98963904/99366281 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7F
Nearest miRNA
hsa-mir-10525/Upstream/484552; hsa-mir-10399/Downstream/42891;
Nearest TSS
ENST00000635602/Upstream/2816; ENST00000429246/Downstream/7968;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/39929, chr7-CpG: 145/Downstream/7745
Nearby gene
ARPC1A(No orient, 19)
Upstream sequence
TTGTCACACTAACTTAAAAGACAGGGTGAGGGAGATATGTAAATTGTCCACTAGAAAATTAAATAAAAGAACTGAATGTGGTTTTGGTTTTGTTTCCTTG
Downstream sequence
TAGTATTTCAATTTTTAGTAGAAAAATATGAGCGAATTCTTCATTCGATTCAGTTTTTTTTAGGCAAAATCTTAGATCCTTGGTTTCTTAAATTGTACCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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