Basic Information
VIS ID
TVIS30009373
Fusion event
HIV-GJC3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99521987/99924364 (Hg38)
End
99521987/99924364 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
GJC3
Nearest miRNA
hsa-mir-10525/Upstream/515100; hsa-mir-10399/Downstream/169196;
Nearest TSS
ENST00000635602/Upstream/4764; ENST00000456499/Downstream/5028;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4691, chr7-CpG: 28/Downstream/73219
Upstream sequence
gggaagtcactatgtgcagcccatgcctaaaaagggagtagttggtgggcacggtggctcacgcctgtaatcccagcactttgggaggctgagtgggtgg
Downstream sequence
atcacctgaggtcaggagttcgagaccagcttggccgacatggtgaaaccccgtctctgctaaaaatacaaaaattagccaggcatggtggtgcacgcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate