VISDB Viral Integration Site DataBase

VIS ID

TVIS30009374

Fusion event

HIV-ZKSCAN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q22.1

Reference genome

Start

End

99639014/100041391 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-7154-5p ; hsa-mir-8060 ; hsa-mir-5571-5p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6789-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-3653-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-4438 ; hsa-mir-6509-5p ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-4772-3p ; hsa-mir-6778-3p ; hsa-mir-8057 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-2116-3p ; hsa-mir-1304-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-4716-5p ; hsa-mir-6890-3p ; hsa-mir-6802-5p ; hsa-mir-6800-5p ; hsa-mir-572 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-1306-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6513-3p

Nearest miRNA

hsa-mir-10525/Upstream/632127; hsa-mir-10399/Downstream/52169;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/25217, chr7-CpG: 81/Downstream/39754

Upstream sequence

TCCAGATGCTTGGTAGATGTTCAATACGTGATTTTTTTTTTAATTGAATGTGTTCATTTAAAATCCTCCTTAACATTTCTAGAAAGACTTCTTTCAATAA

Downstream sequence

ATAATGGAATCTTAGAGGAAAAGTGGTTTTTTAAAAGCTAGGGAACTCCTCCACTAAAAGTAACCATTGGAAACCTCGAATGAGGGCTAAAGTTTTAATC