Basic Information
VIS ID
TVIS30009380
Fusion event
HIV-LOC107986829 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100112334/100514711 (Hg38)
End
100112334/100514711 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
LOC107986829
Nearest miRNA
hsa-mir-10525/Upstream/157990; hsa-mir-10399/Downstream/353325;
Nearest TSS
ENST00000635602/Upstream/4994; ENST00000477022/Downstream/24500;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/20736, chr7-CpG: 63/Downstream/24114
Nearby gene
NYAP1(No orient, 19910)
Upstream sequence
gatctcagctactgcaacctccgcttcccaggttcaagcgattctcctgcctcagactcctgagtagctgggattacagactcgtgccaccacacccggc
Downstream sequence
taatttttgtattttcagtagagacatggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatctacccacctcagcctcccaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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