VISDB Viral Integration Site DataBase

VIS ID

TVIS30009384

Fusion event

HIV-FBXL13 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q22.1

Reference genome

Start

End

102677052/103036605 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4477a ; hsa-mir-9-3p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-5096 ; hsa-mir-3149 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-4775 ; hsa-mir-193b-5p ; hsa-mir-4755-3p ; hsa-mir-4735-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-6890-5p ; hsa-mir-941 ; hsa-mir-590-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426

Nearest miRNA

hsa-mir-10525/Upstream/565074; hsa-mir-10399/Downstream/11616740;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/287139, chr7-CpG: 90/Downstream/38054

Nearest cancer related gene

FBXL13(TSG, No orient, 0)

Upstream sequence

GCAAATTACTGatttatttatttatttatttttgagacagagtctcaatctgtcacccagactggagcacgatcttggctcactgcaatctccactcccc

Downstream sequence

ggttcaagtgattcttgtgccttagtctcctcagtaactgggattacaggtgtgcaccaccacacgtagctaatttttgtatttttagtagaaatggggt