Basic Information
VIS ID
TVIS30009388
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
105860634/106220188 (Hg38)
End
105860634/106220188 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7F
Nearest miRNA
hsa-mir-10525/Upstream/3748657; hsa-mir-10399/Downstream/8433157;
Nearest TSS
ENST00000635602/Upstream/107612; ENST00000609281/Downstream/33430;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/107486, chr7-CpG: 104/Downstream/64016
Nearby gene
NAMPT(No orient, 28098)
Upstream sequence
AGCCCTAGATTCCCTAGAAAGGACCTGCTCCTGCCCCCACCAGTTGCCATGGCAGCAGGTTCCAAGTAACTCCAGCCCAAAGTTTTACACTTAAGAGGCA
Downstream sequence
TGCAACCAACAGGTAAGTAATGACAAGAAGGGCTGTGTGTGCAGTTTGGGTAAGATCAGGCCctggtagaaagagctgtgggctggaggtctgacaacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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