Basic Information
VIS ID
TVIS30009391
Fusion event
HIV-IMMP2L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
110615576/110975520 (Hg38)
End
110615576/110975520 (Hg38)
Orient
-
Location type
Intronic
Target gene
IMMP2L
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-587 ; hsa-mir-3180-5p ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6815-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-103a-2-5p ; hsa-mir-3188 ; hsa-mir-770-5p ; hsa-mir-4712-5p
Nearest miRNA
hsa-mir-10525/Upstream/8503989; hsa-mir-10399/Downstream/3677825;
Nearest TSS
ENST00000635602/Upstream/11955; ENST00000464835/Downstream/115486;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2405058, chr7-CpG: 68/Downstream/586503
Upstream sequence
GTTAACAAAGAGACTCAATTAATTATTTGCTGTTTTGAATGGCTATTTCATTTCACCTCCACCTTTCTTTAAGTGCTGAAAAGCTCAATTGCTTTATTAC
Downstream sequence
CTTAACCTTAGCTTTGGAGAATGCATGCAGAATTTCTTAACTGCCAACTAATAAACTATCTTGATCCAGAAAGTTAATTTTCAGGACCACAGCTTCTAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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