Basic Information
VIS ID
TVIS30009401
Fusion event
HIV-TFEC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
115789897/116149843 (Hg38)
End
115789897/116149843 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7G
Target gene
TFEC
miRNAs that regulate target gene
hsa-mir-374a-5p ; hsa-mir-5096 ; hsa-mir-335-3p ; hsa-mir-769-5p ; hsa-mir-873-5p ; hsa-mir-506-5p
Nearest miRNA
hsa-mir-10525/Upstream/1496388; hsa-mir-10399/Downstream/870368;
Nearest TSS
ENST00000635602/Upstream/119030; ENST00000461440/Downstream/10052;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1227068, chr7-CpG: 71/Downstream/60473
Nearby gene
TES(No orient, 60650)
Upstream sequence
tttctggCTTAAAATTGCTCCCATTGTCCCAACTCCTGCATTCCACATCCAACTAAATAAAACAAAAACTCTTAATTTTCAGCCTTTTCTCCTGAGATCA
Downstream sequence
GACAATAAAGAACTCCGAGACATTAAGTGTTCATCACTGGACTCAGCTATTAAACATTATTTCTTCATGTAGTTTGTCTTGACTCTAGGCAATGGGGCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate