Basic Information
VIS ID
TVIS30009411
Fusion event
HIV-GRM8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
GRCh37/hg19
Start
126111342/126471288 (Hg38)
End
126111342/126471288 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRM8
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-491-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-877-3p
Nearest miRNA
hsa-mir-10525/Upstream/9450969; hsa-mir-10399/Downstream/586800;
Nearest TSS
ENST00000635602/Upstream/5989; ENST00000450061/Downstream/62617;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1541143, chr7-CpG: 237/Downstream/779958
Upstream sequence
gtttaattagatcccatttgtcaattttggctttggttgccattgcttttagtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtaat
Downstream sequence
gcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatcttgaattaatttgtgtataaggtgtaaggaagggatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate