VISDB Viral Integration Site DataBase

VIS ID

TVIS30009414

Fusion event

HIV-NRF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q32.2

Reference genome

Start

End

129334991/129695151 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-320a ; hsa-mir-4772-5p ; hsa-mir-3127-5p ; hsa-mir-6823-5p ; hsa-mir-6798-5p ; hsa-mir-383-5p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-377-3p ; hsa-mir-5579-3p ; hsa-mir-2115-5p ; hsa-mir-1277-5p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-1249-5p ; hsa-mir-6797-5p ; hsa-mir-765 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4487 ; hsa-mir-4756-5p ; hsa-mir-3192-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-6083 ; hsa-mir-3912-5p ; hsa-mir-297 ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-6834-3p ; hsa-mir-380-3p ; hsa-mir-4495 ; hsa-mir-379-3p ; hsa-mir-411-3p ; hsa-mir-7108-5p ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-663b ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-33a-3p ; hsa-mir-3692-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-183-3p ; hsa-mir-5701 ; hsa-mir-6776-5p ; hsa-mir-140-3p ; hsa-mir-944 ; hsa-mir-504-3p

Nearest miRNA

hsa-mir-10525/Upstream/1487208; hsa-mir-10399/Downstream/75232;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/82551, chr7-CpG: 53/Downstream/67229

Nearest cancer related gene

NRF1(TSG, No orient, 0)

Upstream sequence

TATTGCAGTGAATTATATTTGTGGTATGTTAAATTAAAAAACTGATTGTAAAGTAGCATTTTTTATATACTGTAATTTGAGGAGTTTAGGGCTTTATTTT

Downstream sequence

TCTGTTTCTTTTGGGAGATTTAAAAAAAATTCTGGGAACACAGAATTGAGCTGATTTATCTCATTTTCTATAACATTAACATAAAACATGCCCACCTCTG