Basic Information
VIS ID
TVIS30009415
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
129398104/129758264 (Hg38)
End
129398104/129758264 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/1550321; hsa-mir-10399/Downstream/12119;
Nearest TSS
ENST00000635602/Upstream/128186; ENST00000480018/Downstream/26921;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/145664, chr7-CpG: 53/Downstream/4116
Nearby gene
NRF1(No orient, 1182)
Nearest cancer related gene
NRF1(TSG, No orient, 1182)
Upstream sequence
CACATCCGTGCTATTGACTACCATGAAATAGCTGGGTTGTTTAGAATACCTGCTGACCAAGGGTCTCTCCAGAGGCGTCTTCTAGCTGCTGTTTGCCTGG
Downstream sequence
CAAGCCTCAGATGCTGCCTTTGCCACAGGCATGTATTGACAACTGGTTTTGGTGGGGCCGATGGAGACCTCTTCCATTCCTGCCTAAGTCACCAAcagga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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