Basic Information
VIS ID
TVIS30009416
Fusion event
HIV-TMEM209 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
129815619/130175779 (Hg38)
End
129815619/130175779 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMEM209
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-99a-5p ; hsa-mir-6807-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-921 ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-661 ; hsa-mir-298 ; hsa-mir-1827 ; hsa-mir-610 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-3192-5p ; hsa-mir-3174 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-382-5p ; hsa-mir-3156-5p
Nearest miRNA
hsa-mir-10525/Upstream/400765; hsa-mir-10399/Downstream/320332;
Nearest TSS
ENST00000635602/Upstream/2061; ENST00000297819/Downstream/2682;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/34022, chr7-CpG: 25/Downstream/29527
Upstream sequence
AATATAATAAGGGAAGCAAATCATTTAAAAAACTTGATCAAAACACCCAAACCTAAAGAAATAAAAGATATAAAAAGACAAAAGTTAAACATGTCCCTGA
Downstream sequence
AGACATCAGATAAATCCAAAATGTGGGATTTTAGATTTATCTGACTACTATTTTGGCTTCTTAAAAAAAGAGTTGATGGGTAgggaaaatttgaatatgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate