Basic Information
VIS ID
TVIS30009417
Fusion event
HIV-COPG2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
130337828/130652988 (Hg38)
End
130337828/130652988 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7H
Target gene
COPG2
Nearest miRNA
hsa-mir-10525/Upstream/156784; hsa-mir-10399/Downstream/223759;
Nearest TSS
ENST00000635602/Upstream/88477; ENST00000604514/Downstream/15717;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/159718, chr7-CpG: 104/Downstream/15242
Upstream sequence
ATCCTCAGAGATGGTAGCCATTTCTTTGATGGTAAGGTAGCACATTCTCCTCAATGTTTGCTGAAAAATCATTTATAAAAGGTAACAGATTATTGATTAG
Downstream sequence
GAAATGGTTTTTTAAATTATTTGAAGTGAGGACCCCAAGTAGATATATATTTTAGAAAGATATTCTTTAAAAGAGTCTCATCTACCAAAAAAAAAAATTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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