Basic Information
VIS ID
TVIS30009418
Fusion event
HIV-LINC00513 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
130605629/130920870 (Hg38)
End
130605629/130920870 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7H
Target gene
LINC00513
Nearest miRNA
hsa-mir-10525/Upstream/43331; hsa-mir-10399/Downstream/2113990;
Nearest TSS
ENST00000635602/Upstream/7560; ENST00000608412/Downstream/11336;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/186494, chr7-CpG: 215/Downstream/184729
Upstream sequence
CTGGTGACTATAATTGAATCCAAGAATCTAATAAAATAGTCTCTCATGCCAGAAAGAAACCCAAGAAGGTATGTCCTCAGAAAATTTAGTCTGAAGTTGG
Downstream sequence
TCAATTCTTAGGCAGTCACTCTACGTGATCAGAACTTTATTAGTGAGCTTTTGGCCTTGCAGGATTGATGTTTGCTACAGAGATCTTGGCTTGCTCCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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