Basic Information
VIS ID
TVIS30009419
Fusion event
HIV-LINC-PINT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
130630836/130946077 (Hg38)
End
130630836/130946077 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7H
Target gene
LINC-PINT
Nearest miRNA
hsa-mir-10525/Upstream/68538; hsa-mir-10399/Downstream/2088783;
Nearest TSS
ENST00000635602/Upstream/9613; ENST00000446815/Downstream/161851;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/211701, chr7-CpG: 215/Downstream/159522
Nearest cancer related gene
LINC-PINT(TSG, No orient, 0)
Upstream sequence
cagaattaattctgtggagattaaagagctaaatataaaaggaaaaaaaaaaggaagaaaactaaattagtagaaaattatttctgaatttggaatggga
Downstream sequence
aaagaagatttagctttatagaagcaatgaaaaaagtaacaaaaggcaatgtaatccaactgcaacaaaatttaaaacccctatatgtcaaaaaacagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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