Basic Information
VIS ID
TVIS30009424
Fusion event
HIV-CHCHD3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
132657149/132972389 (Hg38)
End
132657149/132972389 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHCHD3
miRNAs that regulate target gene
hsa-mir-423-3p ; hsa-mir-6885-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4439 ; hsa-mir-3977 ; hsa-mir-3136-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-2115-5p ; hsa-mir-6857-3p ; hsa-mir-4513 ; hsa-mir-6855-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-3938 ; hsa-mir-6800-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5581-3p ; hsa-mir-136-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-148a-5p
Nearest miRNA
hsa-mir-10525/Upstream/2094850; hsa-mir-10399/Downstream/62471;
Nearest TSS
ENST00000635602/Upstream/141696; ENST00000481074/Downstream/79673;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/394621, chr7-CpG: 54/Downstream/109360
Upstream sequence
TGGCCTAAATGTTTTAATGTGAAGGTTATTGTAACAGTTATACAAAAGAGTGTATACTATTATCTATGTTTGGAGAAATACCGTTATACACATAAAATCA
Downstream sequence
AATGTTTTATACCAACTCAGTGGGAAGTaaaaaggaatataaacacaacaaaccaaaatgttaacagtaactatctctgaattgtagtacattgagtgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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