Basic Information
VIS ID
TVIS30009425
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
134297029/134612277 (Hg38)
End
134297029/134612277 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/1321289; hsa-mir-10399/Downstream/594717;
Nearest TSS
ENST00000635602/Upstream/47489; ENST00000443095/Downstream/34531;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/152966, chr7-CpG: 63/Downstream/374091
Nearby gene
AKR1B15(No orient, 32437)
Upstream sequence
ACTTAAACAGAAGTTGACATGCTGAGTGTGGTTTTGAAAGATATACAGAAAAAATGATTTCTGAGTATAGAGAACAATAGGAAAAGGTATGGCAGTATAC
Downstream sequence
TAAAAATGAGTAATCCAATTTAGATGAAACAAAGAATCTATGAAGAGATATAATGGAAAACAAAGCCTGAAAAACATACTTGGCCAATATCTGAAGTCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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