VISDB Viral Integration Site DataBase

VIS ID

TVIS30009428

Fusion event

HIV-CNOT4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q33

Reference genome

Start

End

135085317/135400565 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-130b-3p ; hsa-mir-186-5p ; hsa-mir-93-5p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-539-5p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-6511a-5p ; hsa-mir-4311 ; hsa-mir-1910-3p ; hsa-mir-548aw ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3613-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-3925-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p

Nearest miRNA

hsa-mir-10525/Upstream/193487; hsa-mir-10399/Downstream/1502602;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/153807, chr7-CpG: 54/Downstream/109254

Upstream sequence

ATTTCTAGTGTCTGGATCTTGGTTCATCTTCCCAGTCACCACCCAATTTAGTGCTTCCATAAGAGCACTAAATAATAATTTTCAATATAAATGAGGTCTT

Downstream sequence

GCTAATGGCCAGGGCAACATATGAAAATATTACATAAAAAACAAATCTTAAGGATGTTTCTGGATTACAACTAATTAGAATAACTTATATCACTTTGTCC