Basic Information
VIS ID
TVIS30009429
Fusion event
HIV-LOC105375523 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
135732767/136048019 (Hg38)
End
135732767/136048019 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375523
Nearest miRNA
hsa-mir-10525/Upstream/840941; hsa-mir-10399/Downstream/855148;
Nearest TSS
ENST00000635602/Upstream/22258; ENST00000445293/Downstream/44906;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/70495, chr7-CpG: 154/Downstream/821088
Nearby gene
MTPN(No orient, 70563)
Upstream sequence
TCAAAGCAGCATACGGCTTGATTTCTACCTCTTAAATAGGTAGAAATAAAATGCTGTTAGTCATGGGTAGCGTTCAGAAGAGAACAAATCACACCTGGAA
Downstream sequence
ATGAGGATCAAGAATCAGGAATGGATCTGTGCAAACAGTATTTCATTTGAGACTAGAGGCTGGGTAAAACTTGAAGGGGTGAAGATCAGATTTAGTTTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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