Basic Information
VIS ID
TVIS30009430
Fusion event
HIV-SVOPL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
138316510/138631765 (Hg38)
End
138316510/138631765 (Hg38)
Orient
-
Location type
Intronic
Target gene
SVOPL
Nearest miRNA
hsa-mir-10525/Upstream/507944; hsa-mir-10399/Downstream/412335;
Nearest TSS
ENST00000635602/Upstream/4321; ENST00000472775/Downstream/31387;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/170487, chr7-CpG: 74/Downstream/32452
Upstream sequence
tcaagcaatccttgtgcttcggcttcccgagtagctgggagtacaggtgtacatcaaatcgtccagctaatttttgtaattttagtagagacggggtttt
Downstream sequence
accatgttgcccaggctggtctcaaactcctgacttcaagtgatccacccgccttggcctcccaaagtgcttagattacaggcatgtgccaccatgcccg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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