VISDB Viral Integration Site DataBase

VIS ID

TVIS30009431

Fusion event

HIV-FMC1-LUC7L2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q34

Reference genome

Start

End

139082469/139397723 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-6507-5p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-222-5p ; hsa-mir-4775 ; hsa-mir-6832-5p ; hsa-mir-4735-5p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-590-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4284 ; hsa-mir-767-5p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6887-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-6823-5p ; hsa-mir-6890-3p ; hsa-mir-6513-3p ; hsa-mir-29b-2-5p ; hsa-mir-34b-3p ; hsa-mir-6509-5p

Nearest miRNA

hsa-mir-10399/Upstream/353566; hsa-mir-11400/Downstream/3076804;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/36991, chr7-CpG: 130/Downstream/85011

Upstream sequence

TTCATCACCGATTAATCATACCTGTAATGATCCTTGCATCTTGCCAATTTTTTCTCATATTTTCCCCCAAAAAAGTTTCATGAAAGATCTTAACAGTTGC

Downstream sequence

CTAGATACATATAAAAATGGATAGATTTTTAGATATTTTGTCTCAGATATGAGGAAAGCCTCTGGTTTGGTAAATAACACCTAATTGGAATTTCCAAGTA