Basic Information
VIS ID
TVIS30009432
Fusion event
HIV-KDM7A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
139790512/140090712 (Hg38)
End
139790512/140090712 (Hg38)
Orient
-
Location type
UTR3
Target gene
KDM7A
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-3692-3p ; hsa-mir-6875-3p ; hsa-mir-6826-3p ; hsa-mir-539-5p ; hsa-mir-3124-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5571-5p ; hsa-mir-137
Nearest miRNA
hsa-mir-10399/Upstream/1046555; hsa-mir-11400/Downstream/2383815;
Nearest TSS
ENST00000635602/Upstream/26991; ENST00000495590/Downstream/1429;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/27267, chr7-CpG: 247/Downstream/84899
Upstream sequence
ATGTAACACACACACTATCAAAAATAATTTAAAAACCTTCACATTCTTACATCTAAATTAGTGAGATATTTCTCCAGAAATCTTCCAAATAAATAGCTTT
Downstream sequence
AAAAAAAGAATTTAAAAGCTGTTAACTTTAAAAAAAAATCTGTTAAATAAATTATTGATAATTCTTTACCCTACCACTGAAAATACATCAAGACACTACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate