Basic Information
VIS ID
TVIS30009437
Fusion event
HIV-LOC105375545 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
142971225/143274132 (Hg38)
End
142971225/143274132 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375545
Nearest miRNA
hsa-mir-10399/Upstream/799529; hsa-mir-153-2/Downstream/108554;
Nearest TSS
ENST00000635602/Upstream/10636; ENST00000482420/Downstream/5825;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/418708, chr7-CpG: 81/Downstream/13822
Nearby gene
GSTK1(No orient, 5003)
Upstream sequence
tatccaaaatataaaagaaactcaatagcaagaaaacaaatcacccaactgaaaaatgattacaggacgtgaacagacatttctcaaatgaagacataca
Downstream sequence
agtggccaacaggtttatgagaaatgttcaacaactaatcatcagggaaatgcaaatcaaaattacaatgagatagcacctcacatcttgttataatgac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate