Basic Information
VIS ID
TVIS30009441
Fusion event
HIV-OR2F1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
143642668/143945575 (Hg38)
End
143642668/143945575 (Hg38)
Orient
-
Location type
Intronic
Target gene
OR2F1
Nearest miRNA
hsa-mir-10399/Upstream/562775; hsa-mir-153-2/Downstream/3432442;
Nearest TSS
ENST00000635602/Upstream/10409; ENST00000624504/Downstream/9269;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/43242, chr7-CpG: 59/Downstream/249906
Nearby gene
OR2F2(No orient, 9389)
Upstream sequence
tggctcttgcggatcttttacctccgcataaaacgtatggttcccttctattcctagtttactgagagttttttaaaatcatgaataggtgttgaatttt
Downstream sequence
gtcagtttttattctgcatctatttgtatgatgatgtaatgttttttaagcctgcagatgtgatagattggattagctgatttttaaatgttgagccagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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