Basic Information
VIS ID
TVIS30009444
Fusion event
HIV-ZNF777 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
149138344/149441253 (Hg38)
End
149138344/149441253 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
ZNF777
miRNAs that regulate target gene
hsa-mir-296-3p ; hsa-mir-18a-3p ; hsa-mir-106b-5p
Nearest miRNA
hsa-mir-10399/Upstream/2063132; hsa-mir-153-2/Downstream/1797168;
Nearest TSS
ENST00000635602/Upstream/18578; ENST00000486744/Downstream/19870;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/8450, chr7-CpG: 216/Downstream/18217
Upstream sequence
TATTGACAACCAAGCTGCATTCATTTATAAGCAGGAATTTGTTCTCCCATTTAAAAAATTAATCGAagacacatacattgtgggaatatagtttatgaaa
Downstream sequence
aaggtaacatttcaatccagtggggaaGAGTTTAAAAGGAATGGAGACAACTGGCTTCCTGATTAGAAAGGGAAAAAAGCTACTTCACATATTTCACATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate