Basic Information
VIS ID
TVIS30009447
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150186689/150489601 (Hg38)
End
150186689/150489601 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/3111480; hsa-mir-153-2/Downstream/748820;
Nearest TSS
ENST00000635602/Upstream/38971; ENST00000313543/Downstream/25229;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/81159, chr7-CpG: 44/Downstream/230725
Nearby gene
GIMAP8(No orient, 10206)
Upstream sequence
agattggataaaaaagcaagacttcactgtatgctatctaaaggaaagtcactttaaatataaaaacacaaatgggttaaatgtagaagaactgaaaaag
Downstream sequence
atatacatcatgcatacattacacatacaaaaacgacaatggctatattagttatcagacaaagtgggcttcagaacagtgctatctcttcatcaggcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate