Basic Information
VIS ID
TVIS30009451
Fusion event
HIV-LOC107986860 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150260608/150563520 (Hg38)
End
150260608/150563520 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
LOC107986860
Nearest miRNA
hsa-mir-10399/Upstream/3185399; hsa-mir-153-2/Downstream/674901;
Nearest TSS
ENST00000635602/Upstream/48690; ENST00000479232/Downstream/3757;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/155078, chr7-CpG: 44/Downstream/156806
Nearby gene
GIMAP4(No orient, 3850)
Upstream sequence
cagcagattgcaggaggtccacggtttgtcctgagacttcaggtcctcttctgcaagctgggtcaatctcttaatctgcccccaggtcggtggagttgac
Downstream sequence
tggtgagtcttgctggtcaccttctgctcagcagaaatcttcatttgagccatcaggcaagttgggagtgcaaagttccgaggtcttctcctcttccttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate