Basic Information
VIS ID
TVIS30009452
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150316489/150619401 (Hg38)
End
150316489/150619401 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/3241280; hsa-mir-153-2/Downstream/619020;
Nearest TSS
ENST00000635602/Upstream/51965; ENST00000487388/Downstream/12945;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/210959, chr7-CpG: 44/Downstream/100925
Nearby gene
GIMAP6(No orient, 5975)
Upstream sequence
caaacatgtgaataatgtgttgcactatgacattcaatagctactaggtgataggaattttttagtctcatgataaccttatgaagccactgtagtatat
Downstream sequence
gcagcccttaattgatcaaaatgacacgatgcagtgcatgactATACccaattaaatgtagtaattttaatattatttctaataatattaaccataggta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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