Basic Information
VIS ID
TVIS30009459
Fusion event
HIV-GALNT11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
151768860/152071775 (Hg38)
End
151768860/152071775 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
GALNT11
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-27b-3p ; hsa-let-7b-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-5699-5p ; hsa-mir-4323 ; hsa-mir-5009-3p
Nearest miRNA
hsa-mir-10399/Upstream/638136; hsa-mir-153-2/Downstream/5502561;
Nearest TSS
ENST00000635602/Upstream/45977; ENST00000447796/Downstream/2523;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/45619, chr7-CpG: 65/Downstream/57065
Upstream sequence
aatcttcacaatttatgtttagagattgcagtaaagacaggcataagaaattataaaagtattaatttggggaactaataaatgtccatgaaatcttcac
Downstream sequence
aatccacgttcttctgccatggcttcagctagtccctctgtttggggtccctgacttcctgcaacagaccattattctgtcAGTTACGATGTAGCATGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate