Basic Information
VIS ID
TVIS30009464
Fusion event
HIV-RBM33 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
155486069/155693375 (Hg38)
End
155486069/155693375 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
RBM33
miRNAs that regulate target gene
hsa-mir-106b-3p ; hsa-mir-20a-3p ; hsa-mir-221-3p ; hsa-mir-34a-5p ; hsa-mir-33a-5p ; hsa-mir-570-3p ; hsa-mir-586 ; hsa-mir-33b-5p ; hsa-mir-510-3p ; hsa-mir-934 ; hsa-mir-3618 ; hsa-mir-5096 ; hsa-mir-3912-5p ; hsa-mir-6749-3p ; hsa-mir-6802-3p ; hsa-mir-6753-3p ; hsa-mir-7107-3p ; hsa-mir-3667-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-5088-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-1292-5p ; hsa-mir-1972 ; hsa-mir-4502 ; hsa-mir-5586-3p ; hsa-mir-759 ; hsa-mir-8075
Nearest miRNA
hsa-mir-10399/Upstream/4259736; hsa-mir-153-2/Downstream/1880961;
Nearest TSS
ENST00000635602/Upstream/12706; ENST00000486747/Downstream/7516;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/48252, chr7-CpG: 19/Downstream/87533
Upstream sequence
ATTTGGAAGGCAAAGAGCTAGAAGTTGCATCTGTTTCACTCTTGTGAtttttttttctttttttttttctttttttGCTGTTAACACTCTCACATGAAAC
Downstream sequence
TTCCTAAGGGTTGTTTTCAGTATGAATCTTTCTAGCAGAAAGTAAGAGCTCATCCATATTAAGTATTTTGTCTTTTTTATACCATCTGCTAGATGTATTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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