VISDB Viral Integration Site DataBase

VIS ID

TVIS30009468

Fusion event

HIV-ESYT2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q36.3

Reference genome

Start

End

158610282/158817591 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-3941 ; hsa-mir-4672 ; hsa-mir-4515 ; hsa-mir-1288-3p ; hsa-mir-4740-5p ; hsa-mir-3171 ; hsa-mir-298 ; hsa-mir-422a ; hsa-mir-378i ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378c ; hsa-mir-378d ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-4330 ; hsa-mir-3158-5p ; hsa-mir-3654 ; hsa-mir-1245b-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-6757-3p ; hsa-mir-4418 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-8057 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-3664-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-4438

Nearest miRNA

hsa-mir-10399/Upstream/225895;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/13031, chr7-CpG: 208/Downstream/10723

Upstream sequence

aacgaatgtacccgcttccagctgtcccacctttctgaaccaatgtacctgcttccaggtgtcccacctttctgaaccaatgtacccacttccaggtgtc

Downstream sequence

caacctttctgaaccaatgtacagcttacatgtattgattggtgtcttatgtatccctaaaacttacaggtcaacccccttgggcaaatgtcttgagact