Basic Information
VIS ID
TVIS30009471
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
2638680/2781142 (Hg38)
End
2638680/2781142 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3674/Upstream/704502; hsa-mir-10400/Downstream/3840982;
Nearest TSS
ENST00000518652/Upstream/52691; ENST00000522905/Downstream/262646;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/218774, chr8-CpG: 20/Downstream/241022
Nearby gene
LOC101927815(No orient, 52689)
Upstream sequence
ATCTAGGTGACTACGTGAACTTTCCAGGAGTTAGACTGGTGTTTTAATCCAAGAACAGAAACACAGAAGCTGCTAAAGAAAATAGAGACATGAAATATAC
Downstream sequence
AATATGTTTTAAAGTAGCAAACAAAAACCTCTAAATAAATAGGAAAAATATACTTAGTGGGGAAATTGCAACACGGGAGCTTGTTGTAATATATAATTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate