Basic Information
VIS ID
TVIS30009480
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
15799802/15942293 (Hg38)
End
15799802/15942293 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/1088783; hsa-mir-10400/Downstream/1739285;
Nearest TSS
ENST00000518652/Upstream/198763; ENST00000517369/Downstream/31022;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/401515, chr8-CpG: 46/Downstream/1059242
Nearby gene
MSR1(No orient, 165585)
Upstream sequence
AAATCTACTTCTGAGATATCCTCATTGGTAAGGTCCTGTAGGTAATTTAATCATGTGAATTTCACGAATGGAGTTATAGGGAGTAAGAGAAAAGATGTGA
Downstream sequence
AGTGTCCCTTAAGCTAGAGGGAAATGCTTTTGGAGCCAAGAGTCATTGTAGAAACCTGATGATGTGGCTGGTCATTGCCTGCTTTGGCTGTGATTTGATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate