Basic Information
VIS ID
TVIS30009482
Fusion event
HIV-VPS37A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
17143865/17286356 (Hg38)
End
17143865/17286356 (Hg38)
Orient
-
Location type
Exonic
Target gene
VPS37A
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-18a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-148a-3p ; hsa-mir-130a-3p ; hsa-mir-152-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-4282 ; hsa-mir-3666 ; hsa-mir-4671-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-4276 ; hsa-mir-298 ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-205-3p ; hsa-mir-371a-5p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-642a-5p ; hsa-mir-6777-3p ; hsa-mir-483-3p ; hsa-mir-7109-3p ; hsa-mir-3613-3p
Nearest miRNA
hsa-mir-124-1/Upstream/2432846; hsa-mir-10400/Downstream/395222;
Nearest TSS
ENST00000518652/Upstream/9920; ENST00000521162/Downstream/9608;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/39002, chr8-CpG: 64/Downstream/126738
Upstream sequence
AGTTAAAAGCTTCCTGTCATACTGTTGGAAGTAAAGTAGTAGGCATATCTTTGTAAAAGTGACTGGTATTTTCAAAAATTTATTTTCTAGATTTGCCACT
Downstream sequence
GTAGAAGAGCCAAGGAAGAGAAACTTCAGCAGGCGATAGCAATGCACAGCCAATTTCATGCTCCACTATAGGTAAATTGTATTTCAAGTTTGAGTCTCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate