Basic Information
VIS ID
TVIS30009483
Fusion event
HIV-ASAH1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
17936076/18078567 (Hg38)
End
17936076/18078567 (Hg38)
Orient
+
Location type
Intronic
Target gene
ASAH1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-124-1/Upstream/396910; hsa-mir-10400/Downstream/4166399;
Nearest TSS
ENST00000518652/Upstream/1885; ENST00000517747/Downstream/4036;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/154804, chr8-CpG: 103/Downstream/5223
Upstream sequence
AGCTATGAGACTACAGTATTTCAGGGGCTCACATGGCATGAACGCCTAAGTCGTTTATGCAAAAAGGTTAGTTTTAGGGGTAGGGTGGAAAAAAGAGCTA
Downstream sequence
CTTCCTCCCCCTCAAAAAAGAATTCTACAGGGAGACACAGCTTCAAAACCCACGAGTAGCCCTAAAACAGAATTATAATGAACTTACTTAATGTTATTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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