Basic Information
VIS ID
TVIS30009489
Fusion event
HIV-SLC18A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
20035091/20177580 (Hg38)
End
20035091/20177580 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC18A1
Nearest miRNA
hsa-mir-124-1/Upstream/2495923; hsa-mir-10400/Downstream/2067386;
Nearest TSS
ENST00000518652/Upstream/1658; ENST00000520830/Downstream/3384;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/237085, chr8-CpG: 57/Downstream/19455
Upstream sequence
gcctgtcatggagtcgggggagaggggagggatagcattaggagatatacctaatgtaaatgatgagttaatgggtgcagtactccaacatggcacatgt
Downstream sequence
atacatacgtaacaaacctgcacgttgtgcacgtgtaccctagaacttaaagtataattaaaaagaaaagaaaagaaaagaaaaACGCGAGGGAGAAGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate