Basic Information
VIS ID
TVIS30009490
Fusion event
HIV-ATP6V1B2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
20057895/20200384 (Hg38)
End
20057895/20200384 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP6V1B2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-125a-3p ; hsa-mir-503-5p ; hsa-mir-320a ; hsa-mir-196a-5p ; hsa-let-7a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-570-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aj-5p ; hsa-mir-4693-3p ; hsa-mir-548aw ; hsa-mir-4311 ; hsa-mir-4744 ; hsa-mir-4523 ; hsa-mir-544a ; hsa-mir-1468-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-4764-3p ; hsa-mir-323b-3p ; hsa-mir-6082 ; hsa-mir-583 ; hsa-mir-1276
Nearest miRNA
hsa-mir-124-1/Upstream/2518727; hsa-mir-10400/Downstream/2044582;
Nearest TSS
ENST00000518652/Upstream/2945; ENST00000521442/Downstream/17798;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2868, chr8-CpG: 20/Downstream/49537
Upstream sequence
tgggattacaggtgtgagctgctgtgcccagccTAAAGCTTCACACTGAACCTTTAGAAGTCAGAGATCCTTTTtgtgtccccactgcctagcacagtgc
Downstream sequence
ctgacacatagaatgtgccttgtaattgtGTAACTTGCATTTAAACTCAAAAAGCTTTGTTTTTTGAATGAAGAAATGGAGTAATGTTGACAGTTCCACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate