Basic Information
VIS ID
TVIS30009499
Fusion event
HIV-BIN3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
22505015/22647502 (Hg38)
End
22505015/22647502 (Hg38)
Orient
+
Location type
Intronic
Target gene
BIN3
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-mir-98-5p ; hsa-let-7d-5p ; hsa-mir-149-5p ; hsa-mir-184
Nearest miRNA
hsa-mir-124-1/Upstream/402465; hsa-mir-10400/Downstream/2306294;
Nearest TSS
ENST00000518652/Upstream/2606; ENST00000520914/Downstream/21577;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/42147, chr8-CpG: 47/Downstream/21283
Upstream sequence
agaaaggttcagtgacaagcccagggtcactctgctggctcacaagagaacaaggaagaagcaaccagcacccctggtgtccagcccagttttctctctg
Downstream sequence
ctacccacAGTTCAATACTCTTTTCACATGAATTTGTTATAAGTATGTGATGAAAACACCTAGTCTCAAAGTCCTACAGAATTCCAAGGGGCTCATTGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate