VISDB Viral Integration Site DataBase

VIS ID

TVIS30009500

Fusion event

HIV-TNFRSF10B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p21.3

Reference genome

Start

End

22896175/23038662 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-340-5p ; hsa-mir-940 ; hsa-mir-331-3p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-mir-3614-5p ; hsa-mir-376c-3p ; hsa-mir-21-5p ; hsa-let-7g-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-3605-5p ; hsa-mir-4795-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-2392 ; hsa-mir-651-5p ; hsa-mir-3913-3p ; hsa-mir-570-3p ; hsa-mir-512-3p ; hsa-mir-323a-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-5089-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-6500-3p ; hsa-mir-425-5p ; hsa-mir-5088-5p ; hsa-mir-1289 ; hsa-mir-1225-3p ; hsa-mir-4786-5p ; hsa-mir-4305 ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-3620-3p ; hsa-mir-3976 ; hsa-mir-6769a-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-3149 ; hsa-mir-607 ; hsa-mir-8068 ; hsa-mir-496 ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-34a-5p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-6730-5p ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-302a-5p ; hsa-mir-3117-5p ; hsa-mir-3161 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4777-5p ; hsa-mir-517-5p ; hsa-mir-548c-3p ; hsa-mir-5684 ; hsa-mir-6730-3p

Nearest miRNA

hsa-mir-124-1/Upstream/793625; hsa-mir-10400/Downstream/1915134;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/31587, chr8-CpG: 108/Downstream/29480

Nearest cancer related gene

TNFRSF10B(TSG, No orient, 0)

Upstream sequence

ttatatcatagtatttaagtattgttcactttatagtatttatgttccagggtatcaaggaaaggagtaaacaccactcaagaactttgcatcctcttct

Downstream sequence

ggagaaagggttagtgcgttttcagttgtatacaggatagctgtattatgttaggtggaaatataatcttattatttccattacttggagatcaagtatg