VISDB Viral Integration Site DataBase

VIS ID

TVIS30009501

Fusion event

HIV-TNFRSF10A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p21.3

Reference genome

Start

End

23070809/23213296 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-183-5p ; hsa-mir-340-5p ; hsa-mir-5002-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-583 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-4524a-3p ; hsa-mir-483-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-34a-5p ; hsa-mir-106b-5p ; hsa-mir-1238-5p ; hsa-mir-1270 ; hsa-mir-1273g-3p ; hsa-mir-25-5p ; hsa-mir-3064-3p ; hsa-mir-3174 ; hsa-mir-4252 ; hsa-mir-4327 ; hsa-mir-4459 ; hsa-mir-4481 ; hsa-mir-455-3p ; hsa-mir-4683 ; hsa-mir-4695-5p ; hsa-mir-4715-3p ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-6087 ; hsa-mir-620 ; hsa-mir-6499-3p ; hsa-mir-6501-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-124-1/Upstream/968259; hsa-mir-10400/Downstream/1740500;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/49221, chr8-CpG: 74/Downstream/11147

Nearest cancer related gene

TNFRSF10A(TSG, No orient, 0)

Upstream sequence

tttttataatcctttggatttctgtaaagttgttttaaatgtcccctctttcatttctggttttggttatttaagttttctgtcttttttcttagtccat

Downstream sequence

ctaagtaaaggtttgtacattttatagatctctcttaagggtcaactttcagtttctttgagtttctctgcagtttttctattctctatttctgttatct