VISDB Viral Integration Site DataBase

VIS ID

TVIS30009508

Fusion event

HIV-ESCO2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p21.1

Reference genome

Start

End

27664802/27807285 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-192-5p ; hsa-mir-574-5p ; hsa-mir-627-5p ; hsa-mir-4658 ; hsa-mir-6790-5p ; hsa-mir-8088 ; hsa-mir-223-5p ; hsa-mir-3662 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-943 ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6894-5p ; hsa-mir-7106-5p ; hsa-mir-6867-5p ; hsa-mir-3659 ; hsa-mir-924 ; hsa-mir-570-3p ; hsa-mir-3613-3p ; hsa-mir-548p ; hsa-mir-3646 ; hsa-mir-210-3p ; hsa-mir-1247-3p ; hsa-mir-33b-3p ; hsa-mir-3689d ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-377-5p ; hsa-mir-455-3p ; hsa-mir-4662a-3p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-124-1/Upstream/105518; hsa-mir-10400/Downstream/78754;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/32479, chr8-CpG: 37/Downstream/30293

Nearby gene

PBK(No orient, 2336)

Upstream sequence

ttgctgataataggtaaagttttcaacattttactattaaatataaggtttatagtttctttgtagataaatttctaatattaaggaagttcctctgtct

Downstream sequence

attcctaggtttctaggaagctctcaaacatcttgaacagatactcagattttataaaaagtctttcttctatctttggagatgattttgatttttcttt