Basic Information
VIS ID
TVIS30009512
Fusion event
HIV-LOC105379350 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
29394892/29537375 (Hg38)
End
29394892/29537375 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105379350
Nearest miRNA
hsa-mir-124-1/Upstream/1032193; hsa-mir-10400/Downstream/419897;
Nearest TSS
ENST00000518652/Upstream/10063; ENST00000522028/Downstream/10796;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/184091, chr8-CpG: 53/Downstream/489880
Nearby gene
LINC00589(No orient, 183884)
Upstream sequence
AGAGCTGGGAGTGCTTGTTTTGTTGTTGTTGtttttgcttttttttgtttgtttgtttttaactgggacgaagtcttactctgtcacccaggctggagtg
Downstream sequence
cagtagaatgatcttggctcattgcaaccctggcctcctgagttcaagcaattcagcctcagcctccgagagctggtattacacgtatgcaccaccacgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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