VISDB Viral Integration Site DataBase

VIS ID

TVIS30009520

Fusion event

HIV-WRN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p12

Reference genome

Start

End

30981157/31123641 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-3681-3p ; hsa-mir-4717-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-4748 ; hsa-mir-329-5p ; hsa-mir-4464 ; hsa-mir-3664-5p ; hsa-mir-144-3p ; hsa-mir-224-5p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-4533 ; hsa-mir-1252-5p ; hsa-mir-3185 ; hsa-mir-4476 ; hsa-mir-6876-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4709-3p ; hsa-mir-6077 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-5197-3p ; hsa-mir-4311 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-3617-3p ; hsa-mir-216b-5p ; hsa-mir-5089-5p ; hsa-mir-4423-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-500b-3p ; hsa-mir-1295b-3p ; hsa-mir-3622a-5p ; hsa-mir-5582-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-7847-3p ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-3928-3p ; hsa-mir-5003-3p

Nearest miRNA

hsa-mir-124-1/Upstream/1166293; hsa-mir-10400/Downstream/10147407;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/89932, chr8-CpG: 142/Downstream/515368

Upstream sequence

AACGGATCATTTGTGTCTTCAGACTTTCCAGAACTCCTTGAGAATTATGCAGAGGTATTTAATCAGTCAGAAGGTTGAATAGTCAAATTATTAGTGAGTG

Downstream sequence

AAGTCTATTTTGATGAGGATTTTACTAATGCTGTCCCTTAGATATTATAAGTAAATCGTTGTTTTCTTTTGAAATATCTGAAACCTAGTTAACATGGACT