VISDB Viral Integration Site DataBase

VIS ID

TVIS30009524

Fusion event

HIV-RAB11FIP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p11.23

Reference genome

Start

End

37725124/37867606 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-335-5p ; hsa-mir-101-3p ; hsa-mir-93-5p ; hsa-mir-26b-5p ; hsa-mir-744-3p ; hsa-mir-421 ; hsa-mir-615-3p ; hsa-mir-324-3p ; hsa-mir-324-5p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-3942-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-5100 ; hsa-mir-3194-3p ; hsa-mir-10b-3p ; hsa-mir-410-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-205-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-3064-3p ; hsa-mir-7641 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4695-3p ; hsa-mir-149-5p ; hsa-mir-4772-3p ; hsa-mir-7113-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-640 ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-6865-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-5696 ; hsa-mir-194-5p ; hsa-mir-627-3p ; hsa-mir-6758-3p ; hsa-mir-4729 ; hsa-mir-3065-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-6807-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6849-3p ; hsa-mir-6504-3p ; hsa-mir-4438

Nearest miRNA

hsa-mir-124-1/Upstream/7910258; hsa-mir-10400/Downstream/3403442;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/17617, chr8-CpG: 95/Downstream/31330

Upstream sequence

ccagcctgaccgacatggtagaaccccgtctctattaaaaatacaaaaaaattagctgggtgtggtggtgcatgcctgtaatcccagctacctgggaggc

Downstream sequence

tgaggcataagaattgcttgaacctgggaggtagaggttgcagtgagctgataccgtaccattgcactccagcctgatcaaccagagcgaaaatccatca