VISDB Viral Integration Site DataBase

VIS ID

TVIS30009526

Fusion event

HIV-BAG4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p11.23

Reference genome

Start

End

38069441/38211923 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-96-5p ; hsa-mir-183-5p ; hsa-mir-26a-5p ; hsa-mir-452-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-646 ; hsa-mir-3653-3p ; hsa-mir-3674 ; hsa-mir-3935 ; hsa-mir-4490 ; hsa-mir-6838-5p ; hsa-mir-369-3p ; hsa-mir-625-3p ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-6832-5p ; hsa-mir-8084 ; hsa-mir-3606-5p ; hsa-mir-3942-5p ; hsa-mir-4703-5p ; hsa-mir-653-5p ; hsa-mir-466 ; hsa-mir-4274 ; hsa-mir-3941 ; hsa-mir-4643 ; hsa-mir-4672 ; hsa-mir-4704-3p ; hsa-mir-548ao-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-8060 ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-548av-3p ; hsa-mir-590-3p ; hsa-mir-570-3p ; hsa-mir-4803 ; hsa-mir-133a-5p ; hsa-mir-370-3p ; hsa-mir-1976 ; hsa-mir-3692-5p ; hsa-mir-6893-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-548g-3p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-let-7c-3p ; hsa-mir-488-3p ; hsa-mir-4781-3p ; hsa-mir-4789-3p ; hsa-mir-376a-2-5p ; hsa-mir-138-5p ; hsa-mir-6131 ; hsa-mir-7151-5p ; hsa-mir-921 ; hsa-mir-545-5p ; hsa-mir-8080 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-6818-3p ; hsa-mir-8068 ; hsa-mir-1266-3p ; hsa-mir-4793-5p ; hsa-mir-4776-3p ; hsa-mir-6875-3p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-3121-5p ; hsa-mir-1-3p

Nearest miRNA

hsa-mir-124-1/Upstream/8254575; hsa-mir-10400/Downstream/3059125;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/34798, chr8-CpG: 118/Downstream/19294

Upstream sequence

TGCTGTTAGATAGAAGAGACTTAGGTAAATAACTTTTTATGTCTGAGGTGAGTACACAATATTGGTTCTTGGAAAAATAGCTGTTTCTTCATAAGATACC

Downstream sequence

CAAGTGATAATTTTTTTTCCCCTAGACTGTCAGGCCTATGAGTAAATACTAAATCTATTAGCTGTCCCCACTCATAAACCAAACCAAACCAATACAAACA