Basic Information
VIS ID
TVIS30009527
Fusion event
HIV-NSD3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
End
38190134/38332616 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-124-1/Upstream/8375268; hsa-mir-10400/Downstream/2938432;
Nearest cancer related gene
NSD3(OG, No orient, 0)
Upstream sequence
gagtaaaaggggtcctgggaccacaacatctgagaactgctgATTAAGGGCAATGCTACTCTGAAATTGGTTTGACAAACAAGccagtctgggacaaaag
Downstream sequence
taagtacagaagttgagtaagcattgagaagctctgacagcaatttgacattgttatgatatctagacacatgatcaagaatcttgcactaggtgttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate