Fusion event
HIV-NSD3 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
38190134/38332616 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-124-1/Upstream/8375268; hsa-mir-10400/Downstream/2938432;
Nearest cancer related gene
Upstream sequence
gagtaaaaggggtcctgggaccacaacatctgagaactgctgATTAAGGGCAATGCTACTCTGAAATTGGTTTGACAAACAAGccagtctgggacaaaag
Downstream sequence
taagtacagaagttgagtaagcattgagaagctctgacagcaatttgacattgttatgatatctagacacatgatcaagaatcttgcactaggtgttttt
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.