VISDB Viral Integration Site DataBase

VIS ID

TVIS30009530

Fusion event

HIV-FGFR1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p11.23

Reference genome

Start

End

38303722/38446204 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-424-5p ; hsa-mir-16-5p ; hsa-mir-133b ; hsa-mir-124-3p ; hsa-mir-744-5p ; hsa-mir-296-3p ; hsa-mir-181b-5p ; hsa-mir-10a-5p ; hsa-mir-214-3p ; hsa-mir-149-5p ; hsa-mir-149-3p ; hsa-mir-503-5p ; hsa-mir-198 ; hsa-mir-7977 ; hsa-mir-561-5p ; hsa-mir-4284 ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-296-5p ; hsa-mir-573 ; hsa-mir-1226-3p ; hsa-mir-1249-5p ; hsa-mir-185-5p ; hsa-mir-3160-3p ; hsa-mir-3619-5p ; hsa-mir-3665 ; hsa-mir-3689d ; hsa-mir-4306 ; hsa-mir-4419a ; hsa-mir-4487 ; hsa-mir-4510 ; hsa-mir-4530 ; hsa-mir-4644 ; hsa-mir-4792 ; hsa-mir-5192 ; hsa-mir-558 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6134 ; hsa-mir-634 ; hsa-mir-6515-5p ; hsa-mir-6731-5p ; hsa-mir-6760-5p ; hsa-mir-6797-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-761 ; hsa-mir-7847-3p ; hsa-mir-7854-3p ; hsa-mir-8077 ; hsa-mir-8085

Nearest miRNA

hsa-mir-124-1/Upstream/8488856; hsa-mir-10400/Downstream/2824844;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/59027, chr8-CpG: 32/Downstream/19997

Nearest cancer related gene

FGFR1(OG, No orient, 0)

Upstream sequence

GGGTGTCCTTCCTTCCTAGGGAAGCTCTTAGATCACTTCCCTGTTCACATCCTTCTCCTCCCCCATGCCTCCAAGGCAAACTGACTCAGCCCTCTCCCAC

Downstream sequence

Ctttttttttttttttttttttttaaagaggaagtcttgctatgtagccaggctgcagtgcagtggcacaatctcggctcattgcaacctctgactccct