Basic Information
VIS ID
TVIS30009544
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55885487/54972927 (Hg38)
End
55885487/54972927 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/12076652; hsa-mir-10400/Downstream/6741861;
Nearest TSS
ENST00000518652/Upstream/356860; ENST00000522559/Downstream/129462;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/351454, chr8-CpG: 222/Downstream/128169
Nearby gene
XKR4(No orient, 129530)
Upstream sequence
gagccactgcgcctggccTCTTTAGCTATTTTTAACTCAATTTTTCTTTGGGCAGATGCATAGATCCACTGAATATTTTAACTGAAAGATGCTTGATGAT
Downstream sequence
CAGTCAACGAAATCTTTCATTTTCCATAAGTTAACTGTTTGCCTCTTGGTTGCTTCCGAGTTTCTTGAGCTTCCAAGGTCTACCTTGGTCATAAGCCCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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