Basic Information
VIS ID
TVIS30009545
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58294777/57382218 (Hg38)
End
58294777/57382218 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/14485943; hsa-mir-10400/Downstream/4332570;
Nearest TSS
ENST00000518652/Upstream/38411; ENST00000520370/Downstream/110666;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/101893, chr8-CpG: 99/Downstream/612173
Nearby gene
LOC101929488(No orient, 17362)
Upstream sequence
CTTTCTGTAGCGTTAGTGACACGCCAATGAAAGATTAGTATCTGCATGTTTTTACAGCATCCTTTCAGTTATGtatataatattagaattatatattata
Downstream sequence
atattattatacagcatatattgtatatagtatatatattatattatatacgtgtataatatatattacatatgtgtataatatataatataatgtataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate