Basic Information
VIS ID
TVIS30009546
Fusion event
HIV-NSMAF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
59532858/58620299 (Hg38)
End
59532858/58620299 (Hg38)
Orient
-
Location type
Intronic
Target gene
NSMAF
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p
Nearest miRNA
hsa-mir-124-1/Upstream/15724024; hsa-mir-10400/Downstream/3094489;
Nearest TSS
ENST00000518652/Upstream/20121; ENST00000523683/Downstream/3120;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/66755, chr8-CpG: 111/Downstream/38745
Upstream sequence
caacttgaagtctcaggaaagaccttctagaagaactgagagcacagctgaaataagaagaataagcaacagccaggtgcagagaaggaggatgagtttt
Downstream sequence
ctaagcagagggaacaagaacaaaggctcagaggtaagagacaatgtggcacaacagaaactgcaggcaatgcaaataactagggcacagAATTCAAGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate